Brassica Genome

databases

This site hosts Brassica genome databases.


Links to available Brassica genome viewer and search are below:

Brassica napus Panache graph pangenome viewer

  1. B. napus Panache graph pangenome viewer: Graph pangenome representing 10 diverse B. napus whole genmome assemblies.

Combined Brassica napus, Brassica rapa and Brassica oleracea Panache graph pangenome viewer

  1. Brassica napus, Brassica rapa and Brassica oleracea Panache graph pangenome viewer: Graph pangenome representing 15 B. rapa, 5 B. oleracea and 9 B. napus publicly available long read assemblies B. napus whole genmome assemblies.

Brassica napus GBrowse Viewers and Search

  1. B. napus pangenome GBrowse: including snps and functional annotation of genes.
  2. B. napus pangenome GBrowse Fast Keyword Search: Fast search on functional annotation of genes.
  3. B. napus cultivar Tapidor genome browser: including snps and functional annotation of genes.
  4. B. napus cultivar Darmor genome browser: including snps and functional annotation of genes.

Brassica oleracea GBrowse Viewers and Search

  1. B. oleracea pan genome GBrowse: including snps and functional annotation of genes.
  2. B. oleracea pan genome GBrowse Fast Keyword Search: Fast search on functional annotation of genes.

Brassica rapa GBrowse Viewers and Search

  1. B. rapa genome browser: including comprehensive annotation of the repeat fraction of the genome using the genome viewer GBrowse2.

Brassica oleracea/rapa/napus pangenome JBrowse Viewers and Search

  1. JBrowse genome browser including presence/absence variation across the three species.
  2. KnetMiner instance allowing to compare predicted genes with the Arabidopsis thaliana KnetMiner instance.

Batch Download

  1. B. oleracea/rapa/napus pangenome:
  2. B. napus pangenome:
  3. B. oleracea pangenome:

Analysis Tools

BlastGbrowse: A sequence similarity search portal for blasting a query sequence to the Brassica genomes and conveniently viewing hits in the corresponding Genome Browsers.

Illumina paired read sequence data for several Brassica species, wild relatives and pathogens is available at TAGdb [2].

All raw and assembled sequence data is freely available on request.

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